1# Always signal activity first!
 2mkdir -p graphify-out && touch graphify-out/.graphify-activity
 3
 4# Architecture overview
 5graphify query "project overview"
 6
 7# How a system works
 8graphify query "how does the X pipeline work?"
 9
10# What depends on a file
11graphify query "what depends on path/to/file.py?"
12
13# Trace relationship
14graphify path A B
15
16# Deep-dive on component
17graphify explain path/to/file.py

1# Signal activity
2mkdir -p graphify-out && touch graphify-out/.graphify-activity
3
4# Rebuild after significant changes
5graphify update . --code-only   # code only
6graphify update .               # full (needs API key)

1# 1. Get the big picture
2graphify query "project overview"
3
4# 2. Understand main systems
5graphify query "what are the main subsystems?"
6
7# 3. Drill into interesting areas
8graphify query "how does the authentication system work?"
9graphify explain path/to/auth/module.py

1# 1. Find related code
2graphify query "where is user authentication handled?"
3
4# 2. Trace the flow
5graphify path path/to/login.py path/to/session.py
6
7# 3. Check dependencies
8graphify query "what depends on the session module?"

1# 1. Before changing a file, check what depends on it
2graphify query "what depends on path/to/shared/utility.py?"
3
4# 2. Trace call chains
5graphify path path/to/utility.py path/to/consumer.py
6
7# 3. After refactor, rebuild
8graphify update . --code-only

1# 1. Get accurate architecture description
2graphify query "describe the data flow from YouTube URL to Hugo page"
3
4# 2. Find all related files
5graphify query "list all files in the vocabulary extraction pipeline"
6
7# 3. Verify relationships
8graphify path scripts/dictionary/extract_vocab.py data/dictionary/output.yaml